HL_8FR8_063

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

8FR8|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_063 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0878

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FR8|1|A|U|2628
8FR8|1|A|G|2629
8FR8|1|A|A|2630
8FR8|1|A|G|2631
8FR8|1|A|U|2632
8FR8|1|A|G|2633
8FR8|1|A|G|2634
8FR8|1|A|A|2635
8FR8|1|A|A|2636
8FR8|1|A|G|2637

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain V

50S ribosomal protein L15