HL_8FR8_065

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

8FR8|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_065 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1308

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8FR8|1|A|U|2752
8FR8|1|A|G|2753
8FR8|1|A|G|2754
8FR8|1|A|A|2755
8FR8|1|A|G|2756
8FR8|1|A|C|2757
8FR8|1|A|A|2758
8FR8|1|A|G|2759

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain F

50S ribosomal protein L36

Chain P

50S ribosomal protein L6