HL_8FR8_070

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FR8|1|A|G|2975, 8FR8|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_070 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0959

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|C|2969
8FR8|1|A|U|2970
8FR8|1|A|G|2971
8FR8|1|A|A|2972
8FR8|1|A|A|2973
8FR8|1|A|A|2974
8FR8|1|A|G|2975
8FR8|1|A|C|2976
8FR8|1|A|A|2977
8FR8|1|A|U|2978
8FR8|1|A|C|2979
8FR8|1|A|U|2980
8FR8|1|A|A|2981
8FR8|1|A|A|2982
8FR8|1|A|G|2983

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain F

50S ribosomal protein L36

Chain P

50S ribosomal protein L6

Chain T

50S ribosomal protein L13