HL_8FR8_084

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGUGAUGGC

Length

9 nucleotides

Bulged bases

8FR8|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_084 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1311

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FR8|1|a|G|259
8FR8|1|a|G|260
8FR8|1|a|U|261
8FR8|1|a|G|262
8FR8|1|a|A|263
8FR8|1|a|U|264
8FR8|1|a|G|265
8FR8|1|a|G|266
8FR8|1|a|C|267

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain r

30S ribosomal protein S17

Chain t

30S ribosomal protein S20