HL_8FRU_005

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCCGAGGG

Length

8 nucleotides

Bulged bases

8FRU|1|1|G|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_005 not in the Motif Atlas

Geometric match to HL_4FRG_001

Geometric discrepancy: 0.3498

The information below is about HL_4FRG_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8FRU|1|1|C|159
8FRU|1|1|C|160
8FRU|1|1|C|161
8FRU|1|1|G|162
8FRU|1|1|A|163
8FRU|1|1|G|164
8FRU|1|1|G|165
8FRU|1|1|G|166

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

60S ribosomal protein uL4

Chain Y

60S ribosomal protein uL24

Chain e

60S ribosomal protein eL32