8FRU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8FRU_001 | 1/1/36:43 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_8FRU_002 | 1/1/67:72 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8FRU_003 | 1/1/86:92 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_8FRU_004 | 1/1/118:122 | Mini UNCG | geometric HL_5J7L_204 NA | |
| HL_8FRU_005 | 1/1/159:166 | T-loop with 2 bulged bases not stacked | geometric HL_4FRG_001 HL_13999.3 | |
| HL_8FRU_006 | 1/1/173:177 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8FRU_007 | 1/1/181:189 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8FRU_008 | 1/1/230:239 | T-loop related | homologous HL_8P9A_120 HL_63894.2 | |
| HL_8FRU_009 | 1/1/253:262 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_8FRU_010 | 1/1/307:312 | GNRA | homologous HL_5TBW_010 NA | |
| HL_8FRU_011 | 1/1/332:337 | GNRA | homologous HL_5TBW_011 NA | |
| HL_8FRU_012 | 1/1/373:376 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_8FRU_013 | 1/1/386:395 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_8FRU_014 | 1/1/432:437 | No text annotation | ||
| HL_8FRU_015 | 1/1/449:454 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8FRU_016 | 1/1/460:467 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.5 | |
| HL_8FRU_017 | 1/1/480:485 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_8FRU_018 | 1/1/559:564 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8FRU_019 | 1/1/591:600 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8FRU_020 | 1/1/625:633 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8FRU_021 | 1/1/673:678 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_8FRU_022 | 1/1/786:793 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_8FRU_023 | 1/1/834:840 | GNRA | homologous HL_5TBW_025 NA | |
| HL_8FRU_024 | 1/1/856:863 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_8FRU_026 | 1/1/1041:1046 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_8FRU_027 | 1/1/1089:1094 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8FRU_028 | 1/1/1147:1153 | No text annotation | ||
| HL_8FRU_029 | 1/1/1187:1195 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_8FRU_030 | 1/1/1226:1231 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8FRU_031 | 1/1/1243:1246 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8FRU_032 | 1/1/1270:1279 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8FRU_033 | 1/1/1299:1304 | GNRA | homologous HL_5TBW_036 NA | |
| HL_8FRU_034 | 1/1/1343:1353 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_8FRU_035 | 1/1/1382:1388 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_8FRU_036 | 1/1/1433:1437 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8FRU_037 | 1/1/1474:1481 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8FRU_038 | 1/1/1492:1498 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8FRU_039 | 1/1/1553:1558 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8FRU_041 | 1/1/1597:1601 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_8FRU_042 | 1/1/1622:1632 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_8FRU_043 | 1/1/1651:1656 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8FRU_044 | 1/1/1706:1711 | GNRA | homologous HL_5TBW_048 NA | |
| HL_8FRU_045 | 1/1/1739:1749 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_8FRU_046 | 1/1/1778:1786 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8FRU_047 | 1/1/1855:1864 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8FRU_049 | 1/1/2003:2010 | No text annotation | ||
| HL_8FRU_050 | 1/1/2038:2046 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8FRU_051 | 1/1/2055:2067 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_8FRU_052 | 1/1/2095:2103 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_8FRU_053 | 1/1/2115:2122 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_8FRU_054 | 1/1/2145:2155 | No text annotation | ||
| HL_8FRU_055 | 1/1/2166:2171 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8FRU_056 | 1/1/2197:2205 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8FRU_057 | 1/1/2261:2269 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8FRU_058 | 1/1/2318:2325 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8FRU_059 | 1/1/2341:2347 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8FRU_060 | 1/1/2383:2388 | GNRA | homologous HL_5TBW_064 NA | |
| HL_8FRU_061 | 1/1/2441:2446 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8FRU_062 | 1/1/2483:2488 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8FRU_063 | 1/1/2524:2538 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8FRU_064 | 1/1/2570:2599 | No text annotation | ||
| HL_8FRU_065 | 1/1/2614:2622 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_8FRU_066 | 1/1/2652:2656 | Mini UNCG | geometric HL_5TBW_040 NA | |
| HL_8FRU_073 | 1/3/31:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8FRU_067 | 1/3/35:41 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_8FRU_068 | 1/3/86:91 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8FRU_069 | 1/4/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_8FRU_070 | 1/4/73:80 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_8FRU_071 | 1/4/107:111 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_8FRU_072 | 1/4/114:119 | UNCG variation | geometric HL_2CZJ_007 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8FRU_025 | No text annotation | ||
| HL_8FRU_040 | No text annotation | ||
| HL_8FRU_048 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8FRU_001 | 1/1/2:4, 1/4/137:139 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.4 | |
| IL_8FRU_002 | 1/1/6:7, 1/4/133:135 | Single bulged U | geometric IL_5TBW_053 NA | |
| IL_8FRU_003 | 1/1/25:26, 1/1/54:56 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8FRU_004 | 1/1/30:36, 1/1/43:50 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.3 | |
| IL_8FRU_005 | 1/1/80:85, 1/1/93:99 | No text annotation | ||
| IL_8FRU_006 | 1/1/114:117, 1/1/127:128 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_74641.2 | |
| IL_8FRU_110 | 1/1/114:118, 1/1/122:128 | No text annotation | ||
| IL_8FRU_007 | 1/1/117:118, 1/1/122:127 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_8FRU_008 | 1/1/278:281, 1/4/31:33 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_8FRU_009 | 1/1/286:288, 1/4/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_8FRU_010 | 1/1/326:330, 1/1/339:351 | No text annotation | geometric IL_4V9F_014 IL_31504.1 | |
| IL_8FRU_011 | 1/1/352:358, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_8FRU_012 | 1/1/362:364, 1/4/7:9 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_01003.4 | |
| IL_8FRU_111 | 1/1/425:430, 1/1/439:443 | No text annotation | ||
| IL_8FRU_014 | 1/1/473:474, 1/1/491:493 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_8FRU_015 | 1/1/518:520, 1/1/653:655 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8FRU_016 | 1/1/520:524, 1/1/646:653 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_8FRU_017 | 1/1/548:549, 1/1/574:576 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_8FRU_018 | 1/1/549:553, 1/1/570:574 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8FRU_019 | 1/1/584:587, 1/1/603:605 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8FRU_020 | 1/1/588:590, 1/1/601:602 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8FRU_021 | 1/1/622:624, 1/1/634:638 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_8FRU_022 | 1/1/684:685, 1/1/819:821 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8FRU_023 | 1/1/692:694, 1/1/811:812 | No text annotation | ||
| IL_8FRU_024 | 1/1/696:698, 1/1/808:809 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8FRU_025 | 1/1/706:710, 1/1/763:767 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_8FRU_026 | 1/1/710:711, 1/1/761:763 | Minor groove platform | geometric IL_4V9F_034 IL_34520.3 | |
| IL_8FRU_027 | 1/1/712:716, 1/1/757:760 | C-loop | homologous IL_5TBW_040 NA | |
| IL_8FRU_028 | 1/1/717:721, 1/1/752:756 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_8FRU_029 | 1/1/725:728, 1/1/747:748 | Major groove minor groove platform; mini C-loop | geometric IL_1I6U_002 IL_73108.2 | |
| IL_8FRU_030 | 1/1/784:786, 1/1/793:794 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_8FRU_031 | 1/1/828:830, 1/1/844:846 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_8FRU_032 | 1/1/875:879, 1/1/1026:1030 | UAA/GAN variation | geometric IL_4V9F_094 IL_45790.2 | |
| IL_8FRU_033 | 1/1/881:888, 1/1/1023:1024 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8FRU_034 | 1/1/894:903, 1/1/997:1017 | No text annotation | ||
| IL_8FRU_035 | 1/1/905:907, 1/1/994:995 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8FRU_036 | 1/1/916:924, 1/1/981:985 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_8FRU_037 | 1/1/1061:1063, 1/1/1114:1117 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8FRU_038 | 1/1/1070:1074, 1/1/1106:1107 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8FRU_039 | 1/1/1075:1082, 1/1/1101:1105 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_8FRU_040 | 1/1/1086:1088, 1/1/1095:1097 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8FRU_041 | 1/1/1130:1136, 1/1/1840:1845 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_8FRU_042 | 1/1/1174:1177, 1/1/1468:1469 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_8FRU_043 | 1/1/1183:1187, 1/1/1195:1197 | C-loop | geometric IL_4V9F_051 IL_63596.12 | |
| IL_8FRU_044 | 1/1/1214:1218, 1/1/1256:1261 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_8FRU_045 | 1/1/1218:1219, 1/1/1254:1256 | Single bulged U | geometric IL_3WBM_001 IL_97561.5 | |
| IL_8FRU_046 | 1/1/1235:1240, 1/1/1249:1251 | No text annotation | ||
| IL_8FRU_047 | 1/1/1324:1327, 1/1/1427:1430 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_8FRU_048 | 1/1/1333:1334, 1/1/1419:1421 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_8FRU_049 | 1/1/1367:1371, 1/1/1401:1405 | No text annotation | geometric IL_6JXM_002 IL_14445.1 | |
| IL_8FRU_114 | 1/1/1376:1380, 1/1/1390:1396 | No text annotation | ||
| IL_8FRU_051 | 1/1/1513:1518, 1/1/1833:1835 | No text annotation | geometric IL_4WF9_062 IL_12566.5 | |
| IL_8FRU_052 | 1/1/1525:1527, 1/1/1824:1826 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8FRU_053 | 1/1/1528:1531, 1/1/1822:1823 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_8FRU_113 | 1/1/1528:1536, 1/1/1819:1823 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8FRU_054 | 1/1/1531:1536, 1/1/1819:1822 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
| IL_8FRU_055 | 1/1/1548:1553, 1/1/1558:1564 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_8FRU_056 | 1/1/1570:1572, 1/1/1593:1595 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8FRU_057 | 1/1/1577:1578, 1/1/1585:1588 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8FRU_058 | 1/1/1615:1616, 1/1/1809:1811 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_8FRU_059 | 1/1/1643:1648, 1/1/1659:1666 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8FRU_060 | 1/1/1682:1685, 1/1/1731:1732 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_8FRU_061 | 1/1/1686:1687, 1/1/1727:1730 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8FRU_062 | 1/1/1690:1692, 1/1/1723:1724 | Single bulged C | geometric IL_7KGA_004 IL_05642.3 | |
| IL_8FRU_063 | 1/1/1692:1696, 1/1/1721:1723 | 8-nt loop receptor | geometric IL_5T83_002 IL_83497.1 | |
| IL_8FRU_064 | 1/1/1697:1702, 1/1/1715:1720 | No text annotation | ||
| IL_8FRU_065 | 1/1/1704:1706, 1/1/1711:1713 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.4 | |
| IL_8FRU_066 | 1/1/1762:1763, 1/1/1793:1796 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8FRU_067 | 1/1/1763:1774, 1/1/1790:1793 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_8FRU_068 | 1/1/1877:1880, 1/1/2406:2408 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8FRU_069 | 1/1/1882:1884, 1/1/2401:2404 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8FRU_070 | 1/1/1894:1897, 1/1/2232:2234 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_01003.4 | |
| IL_8FRU_071 | 1/1/1898:1899, 1/1/2228:2231 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8FRU_072 | 1/1/1909:1911, 1/1/2026:2029 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_8FRU_073 | 1/1/1929:1930, 1/1/1985:1988 | Multiple bulged bases | geometric IL_6IV9_001 IL_71421.3 | |
| IL_8FRU_074 | 1/1/2036:2037, 1/1/2047:2049 | No text annotation | ||
| IL_8FRU_075 | 1/1/2088:2090, 1/1/2108:2112 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8FRU_076 | 1/1/2090:2092, 1/1/2106:2108 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 IL_01003.4 | |
| IL_8FRU_077 | 1/1/2136:2138, 1/1/2162:2163 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_8FRU_078 | 1/1/2191:2193, 1/1/2209:2210 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_8FRU_079 | 1/1/2244:2247, 1/1/2284:2288 | No text annotation | geometric IL_1J2B_001 IL_69301.1 | |
| IL_8FRU_080 | 1/1/2247:2249, 1/1/2283:2284 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_8FRU_081 | 1/1/2249:2251, 1/1/2279:2283 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.2 | |
| IL_8FRU_082 | 1/1/2256:2260, 1/1/2270:2274 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8FRU_083 | 1/1/2297:2298, 1/1/2369:2371 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_8FRU_084 | 1/1/2300:2302, 1/1/2363:2367 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8FRU_085 | 1/1/2302:2303, 1/1/2360:2363 | Multiple bulged bases | geometric IL_4V9F_088 IL_44609.2 | |
| IL_8FRU_086 | 1/1/2312:2313, 1/1/2330:2333 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8FRU_087 | 1/1/2339:2341, 1/1/2347:2349 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8FRU_088 | 1/1/2380:2381, 1/1/2390:2392 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_8FRU_089 | 1/1/2420:2423, 1/1/2553:2556 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8FRU_090 | 1/1/2435:2441, 1/1/2446:2451 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_02666.1 | |
| IL_8FRU_091 | 1/1/2463:2467, 1/1/2506:2508 | C-loop | geometric IL_4JRC_003 IL_63596.12 | |
| IL_8FRU_092 | 1/1/2467:2469, 1/1/2504:2506 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.4 | |
| IL_8FRU_093 | 1/1/2470:2474, 1/1/2499:2503 | UAA/GAN related, with intercalation | geometric IL_4WF9_102 IL_82016.1 | |
| IL_8FRU_094 | 1/1/2478:2479, 1/1/2492:2495 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8FRU_095 | 1/1/2516:2521, 1/1/2541:2546 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_8FRU_096 | 1/1/2561:2565, 1/1/2604:2607 | No text annotation | ||
| IL_8FRU_097 | 1/1/2629:2630, 1/1/2677:2679 | Minor groove platform related | geometric IL_3K0J_002 IL_34520.3 | |
| IL_8FRU_098 | 1/1/2634:2635, 1/1/2671:2673 | Single bulged C | geometric IL_5KPY_001 IL_05642.3 | |
| IL_8FRU_099 | 1/1/2638:2643, 1/1/2664:2668 | No text annotation | geometric IL_5TBW_133 NA | |
| IL_8FRU_100 | 1/1/2646:2648, 1/1/2660:2661 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_8FRU_101 | 1/1/2648:2651, 1/1/2657:2660 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_8FRU_102 | 1/3/14:15, 1/3/62:64 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8FRU_103 | 1/3/20:26, 1/3/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8FRU_104 | 1/3/27:28, 1/3/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8FRU_105 | 1/3/31:35, 1/3/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_8FRU_106 | 1/3/71:78, 1/3/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8FRU_107 | 1/3/83:85, 1/3/92:93 | Single bulged U | homologous IL_4V9F_107 IL_97561.5 | |
| IL_8FRU_108 | 1/4/63:64, 1/4/95:97 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_8FRU_109 | 1/4/69:73, 1/4/80:90 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8FRU_013 | No text annotation | ||
| IL_8FRU_112 | No text annotation | ||
| IL_8FRU_050 | Kink-turn |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8FRU_011 | 1/1/109:112, 1/1/130:131, 1/1/215:219 | No text annotation | ||
| J3_8FRU_012 | 1/1/149:155, 1/1/170:179, 1/1/191:196 | No text annotation | ||
| J3_8FRU_013 | 1/1/289:306, 1/1/313:318, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8FRU_014 | 1/1/319:326, 1/1/351:352, 1/4/19:20 | No text annotation | geometric J3_4WF9_010 J3_68715.1 | |
| J3_8FRU_015 | 1/1/319:330, 1/1/339:352, 1/4/19:20 | No text annotation | geometric J3_4V9F_012 J3_24879.1 | |
| J3_8FRU_001 | 1/1/529:535, 1/1/620:622, 1/1/638:641 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8FRU_002 | 1/1/543:546, 1/1/578:582, 1/1/607:612 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_8FRU_016 | 1/1/699:700, 1/1/773:775, 1/1/803:807 | No text annotation | ||
| J3_8FRU_003 | 1/1/1161:1167, 1/1/1487:1489, 1/1/1501:1504 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8FRU_004 | 1/1/1170:1173, 1/1/1470:1473, 1/1/1482:1484 | No text annotation | ||
| J3_8FRU_017 | 1/1/1208:1213, 1/1/1262:1266, 1/1/1283:1284 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_8FRU_005 | 1/1/1220:1224, 1/1/1233:1235, 1/1/1251:1253 | No text annotation | ||
| J3_8FRU_006 | 1/1/1293:1297, 1/1/1306:1309, 1/1/1451:1455 | No text annotation | ||
| J3_8FRU_018 | 1/1/1318:1322, 1/1/1432:1433, 1/1/1437:1442 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8FRU_019 | 1/1/1338:1339, 1/1/1357:1362, 1/1/1410:1415 | No text annotation | ||
| J3_8FRU_007 | 1/1/1918:1921, 1/1/1996:2000, 1/1/2013:2019 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_8FRU_020 | 1/1/2073:2075, 1/1/2176:2187, 1/1/2214:2219 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
| J3_8FRU_008 | 1/1/2086:2088, 1/1/2112:2114, 1/1/2123:2128 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8FRU_009 | 1/1/2307:2310, 1/1/2335:2337, 1/1/2351:2356 | No text annotation | ||
| J3_8FRU_021 | 1/1/2610:2611, 1/1/2625:2628, 1/1/2680:2684 | No text annotation | ||
| J3_8FRU_022 | 1/3/8:13, 1/3/65:66, 1/3/109:110 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_8FRU_023 | 1/4/44:45, 1/4/58:64, 1/4/95:99 | No text annotation | geometric J3_5TBW_071 NA | |
| J4_8FRU_001 | 1/1/108:109, 1/1/219:224, 1/1/245:249, 1/1/266:269 | No text annotation | ||
| J4_8FRU_002 | 1/1/149:155, 1/1/170:173, 1/1/177:179, 1/1/191:196 | No text annotation | ||
| J4_8FRU_003 | 1/1/1137:1143, 1/1/1157:1160, 1/1/1505:1510, 1/1/1838:1839 | No text annotation | ||
| J4_8FRU_004 | 1/1/1174:1178, 1/1/1202:1208, 1/1/1284:1286, 1/1/1462:1469 | No text annotation | ||
| J4_8FRU_005 | 1/1/1177:1178, 1/1/1202:1208, 1/1/1284:1286, 1/1/1462:1468 | No text annotation | ||
| J4_8FRU_006 | 1/1/1617:1621, 1/1/1633:1637, 1/1/1672:1676, 1/1/1803:1808 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_8FRU_007 | 1/1/1678:1680, 1/1/1734:1735, 1/1/1753:1762, 1/1/1796:1801 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8FRU_008 | 1/1/2076:2080, 1/1/2134:2136, 1/1/2163:2164, 1/1/2173:2175 | No text annotation | ||
| J4_8FRU_009 | 1/1/2076:2080, 1/1/2134:2138, 1/1/2162:2164, 1/1/2173:2175 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_8FRU_010 | 1/1/2425:2428, 1/1/2458:2459, 1/1/2512:2514, 1/1/2548:2551 | No text annotation | ||
| J5_8FRU_001 | 1/1/18:20, 1/4/35:42, 1/4/101:106, 1/4/112:113, 1/4/120:122 | No text annotation | ||
| J5_8FRU_002 | 1/1/404:409, 1/1/514:517, 1/1/656:659, 1/1/1060:1061, 1/1/1117:1123 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_8FRU_003 | 1/1/421:424, 1/1/444:448, 1/1/455:460, 1/1/467:468, 1/1/498:502 | No text annotation | ||
| J5_8FRU_004 | 1/1/1174:1178, 1/1/1202:1213, 1/1/1262:1266, 1/1/1283:1286, 1/1/1462:1469 | No text annotation | ||
| J5_8FRU_005 | 1/1/1536:1544, 1/1/1568:1569, 1/1/1596:1597, 1/1/1601:1609, 1/1/1817:1819 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_8FRU_006 | 1/1/1885:1892, 1/1/2236:2244, 1/1/2288:2297, 1/1/2371:2377, 1/1/2395:2400 | No text annotation | ||
| J5_8FRU_007 | 1/1/1902:1905, 1/1/2033:2036, 1/1/2049:2050, 1/1/2072:2073, 1/1/2219:2225 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_8FRU_001 | 1/1/20:25, 1/1/56:66, 1/1/73:77, 1/1/102:106, 1/1/271:278, 1/4/33:35 | No text annotation | ||
| J6_8FRU_002 | 1/1/1902:1905, 1/1/2033:2036, 1/1/2049:2050, 1/1/2072:2075, 1/1/2176:2187, 1/1/2214:2225 | No text annotation | ||
| J7_8FRU_001 | 1/1/664:669, 1/1/682:683, 1/1/822:825, 1/1/849:854, 1/1/865:869, 1/1/1036:1037, 1/1/1050:1055 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8FRU_010 | No text annotation |
Coloring options: