HL_8FRU_015

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_015 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1989

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FRU|1|1|C|449
8FRU|1|1|G|450
8FRU|1|1|A|451
8FRU|1|1|G|452
8FRU|1|1|C|453
8FRU|1|1|G|454

Current chains

Chain 1

28S rRNA

Nearby chains

Chain L

60S ribosomal protein eL13

Chain Q

60S ribosomal protein eL18

Chain a

60S ribosomal protein uL15

Chain i

60S ribosomal protein eL36