HL_8FRU_017

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCUGCG

Length

6 nucleotides

Bulged bases

8FRU|1|1|U|482, 8FRU|1|1|C|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_017 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2938

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8FRU|1|1|C|480
8FRU|1|1|C|481
8FRU|1|1|U|482
8FRU|1|1|G|483
8FRU|1|1|C|484
8FRU|1|1|G|485

Current chains

Chain 1

28S rRNA

Nearby chains

Chain L

60S ribosomal protein eL13

Chain a

60S ribosomal protein uL15