HL_8FRU_023

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8FRU|1|1|G|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_023 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.0776

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FRU|1|1|G|834
8FRU|1|1|G|835
8FRU|1|1|U|836
8FRU|1|1|A|837
8FRU|1|1|A|838
8FRU|1|1|G|839
8FRU|1|1|C|840

Current chains

Chain 1

28S rRNA

Nearby chains

Chain I

60S ribosomal protein uL16