HL_8FRU_032

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCGGAGACUC

Length

10 nucleotides

Bulged bases

8FRU|1|1|C|1277, 8FRU|1|1|U|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_032 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.2232

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FRU|1|1|G|1270
8FRU|1|1|C|1271
8FRU|1|1|G|1272
8FRU|1|1|G|1273
8FRU|1|1|A|1274
8FRU|1|1|G|1275
8FRU|1|1|A|1276
8FRU|1|1|C|1277
8FRU|1|1|U|1278
8FRU|1|1|C|1279

Current chains

Chain 1

28S rRNA

Nearby chains

Chain R

60S ribosomal protein eL19

Chain X

60S ribosomal protein uL23

Chain g

60S ribosomal protein eL34