HL_8FRU_038

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UCAGCAG

Length

7 nucleotides

Bulged bases

8FRU|1|1|C|1496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_038 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.081

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FRU|1|1|U|1492
8FRU|1|1|C|1493
8FRU|1|1|A|1494
8FRU|1|1|G|1495
8FRU|1|1|C|1496
8FRU|1|1|A|1497
8FRU|1|1|G|1498

Current chains

Chain 1

28S rRNA

Nearby chains

Chain R

60S ribosomal protein eL19