HL_8FRU_047

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8FRU|1|1|A|1858, 8FRU|1|1|A|1859, 8FRU|1|1|C|1860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_047 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0988

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8FRU|1|1|G|1855
8FRU|1|1|G|1856
8FRU|1|1|G|1857
8FRU|1|1|A|1858
8FRU|1|1|A|1859
8FRU|1|1|C|1860
8FRU|1|1|G|1861
8FRU|1|1|G|1862
8FRU|1|1|G|1863
8FRU|1|1|C|1864

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain e

60S ribosomal protein eL32