HL_8FRU_050

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8FRU|1|1|G|2040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_050 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1209

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8FRU|1|1|C|2038
8FRU|1|1|U|2039
8FRU|1|1|G|2040
8FRU|1|1|G|2041
8FRU|1|1|G|2042
8FRU|1|1|G|2043
8FRU|1|1|C|2044
8FRU|1|1|G|2045
8FRU|1|1|G|2046

Current chains

Chain 1

28S rRNA

Nearby chains

Chain I

60S ribosomal protein uL16

Chain b

60S ribosomal protein eL29