HL_8FRU_053

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_053 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1998

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8FRU|1|1|C|2115
8FRU|1|1|A|2116
8FRU|1|1|G|2117
8FRU|1|1|A|2118
8FRU|1|1|A|2119
8FRU|1|1|G|2120
8FRU|1|1|G|2121
8FRU|1|1|G|2122

Current chains

Chain 1

28S rRNA

Nearby chains

Chain I

60S ribosomal protein uL16

Chain T

60S ribosomal protein eL21

Chain o

60S ribosomal protein eL42