HL_8FRU_055

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_055 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1024

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FRU|1|1|C|2166
8FRU|1|1|G|2167
8FRU|1|1|A|2168
8FRU|1|1|A|2169
8FRU|1|1|A|2170
8FRU|1|1|G|2171

Current chains

Chain 1

28S rRNA

Nearby chains

Chain D

60S ribosomal protein uL18

Chain T

60S ribosomal protein eL21

Chain o

60S ribosomal protein eL42