HL_8FRU_071

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_071 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1339

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8FRU|1|4|C|107
8FRU|1|4|A|108
8FRU|1|4|G|109
8FRU|1|4|C|110
8FRU|1|4|G|111

Current chains

Chain 4

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain j

60S ribosomal protein eL37

Chain l

60S ribosomal protein eL39