HL_8FZD_018

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8FZD|1|A|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_018 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2431

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8FZD|1|A|C|611
8FZD|1|A|G|612
8FZD|1|A|A|613
8FZD|1|A|A|614
8FZD|1|A|U|615
8FZD|1|A|A|616
8FZD|1|A|G|617

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4