HL_8FZD_035

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8FZD|1|A|A|1453, 8FZD|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_035 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0896

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FZD|1|A|C|1451
8FZD|1|A|G|1452
8FZD|1|A|A|1453
8FZD|1|A|C|1454
8FZD|1|A|G|1455
8FZD|1|A|G|1456
8FZD|1|A|U|1457
8FZD|1|A|U|1458
8FZD|1|A|G|1459

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L17