3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
8FZD|1|A|U|1693
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZD_041 not in the Motif Atlas
Geometric match to HL_7RQB_042
Geometric discrepancy: 0.1072
The information below is about HL_7RQB_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03562.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
56

Unit IDs

8FZD|1|A|C|1691
8FZD|1|A|U|1692
8FZD|1|A|U|1693
8FZD|1|A|C|1694
8FZD|1|A|G|1695
8FZD|1|A|G|1696

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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