HL_8FZD_054

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8FZD|1|A|A|2268, 8FZD|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0985

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8FZD|1|A|C|2264
8FZD|1|A|U|2265
8FZD|1|A|A|2266
8FZD|1|A|A|2267
8FZD|1|A|A|2268
8FZD|1|A|G|2269
8FZD|1|A|A|2270
8FZD|1|A|G|2271
8FZD|1|A|U|2272
8FZD|1|A|A|2273
8FZD|1|A|A|2274
8FZD|1|A|C|2275
8FZD|1|A|G|2276

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L16

Chain Y

50S ribosomal protein L27