HL_8FZD_079

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1085

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FZD|1|a|A|320
8FZD|1|a|A|321
8FZD|1|a|C|322
8FZD|1|a|U|323
8FZD|1|a|G|324
8FZD|1|a|A|325
8FZD|1|a|G|326
8FZD|1|a|A|327
8FZD|1|a|C|328
8FZD|1|a|A|329
8FZD|1|a|C|330
8FZD|1|a|G|331
8FZD|1|a|G|332
8FZD|1|a|U|333

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20