HL_8FZE_105

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8FZE|1|y|G|18, 8FZE|1|y|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZE_105 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.5785

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FZE|1|y|C|13
8FZE|1|y|A|14
8FZE|1|y|G|15
8FZE|1|y|G|18
8FZE|1|y|G|19
8FZE|1|y|U|20
8FZE|1|y|A|21
8FZE|1|y|G|22

Current chains

Chain y

P-site phenylalanyl-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA