HL_8FZF_009

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8FZF|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1171

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8FZF|1|A|C|305
8FZF|1|A|U|306
8FZF|1|A|G|307
8FZF|1|A|G|308
8FZF|1|A|A|309
8FZF|1|A|A|310
8FZF|1|A|A|311
8FZF|1|A|G|312

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L24