HL_8FZF_018

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8FZF|1|A|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_018 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2165

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8FZF|1|A|C|611
8FZF|1|A|G|612
8FZF|1|A|A|613
8FZF|1|A|A|614
8FZF|1|A|U|615
8FZF|1|A|A|616
8FZF|1|A|G|617

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4