HL_8FZF_024

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8FZF|1|A|U|827, 8FZF|1|A|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_024 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.143

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

8FZF|1|A|U|826
8FZF|1|A|U|827
8FZF|1|A|U|828
8FZF|1|A|A|829
8FZF|1|A|G|830
8FZF|1|A|G|831

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L15