HL_8FZF_035

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8FZF|1|A|A|1453, 8FZF|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_035 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1083

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FZF|1|A|C|1451
8FZF|1|A|G|1452
8FZF|1|A|A|1453
8FZF|1|A|C|1454
8FZF|1|A|G|1455
8FZF|1|A|G|1456
8FZF|1|A|U|1457
8FZF|1|A|U|1458
8FZF|1|A|G|1459

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17