3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
8FZF|1|A|A|2268, 8FZF|1|A|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_053 not in the Motif Atlas
Homologous match to HL_5J7L_187
Geometric discrepancy: 0.0923
The information below is about HL_5J7L_187
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8FZF|1|A|C|2264
8FZF|1|A|U|2265
8FZF|1|A|A|2266
8FZF|1|A|A|2267
8FZF|1|A|A|2268
8FZF|1|A|G|2269
8FZF|1|A|A|2270
8FZF|1|A|G|2271
8FZF|1|A|U|2272
8FZF|1|A|A|2273
8FZF|1|A|A|2274
8FZF|1|A|C|2275
8FZF|1|A|G|2276

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L16
Chain Y
50S ribosomal protein L27

Coloring options:


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