HL_8FZF_076

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8FZF|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_076 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1571

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FZF|1|a|G|259
8FZF|1|a|G|260
8FZF|1|a|U|261
8FZF|1|a|A|262
8FZF|1|a|A|263
8FZF|1|a|C|264
8FZF|1|a|G|265
8FZF|1|a|G|266
8FZF|1|a|C|267

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

30S ribosomal protein S20