HL_8FZF_078

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1184

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FZF|1|a|A|320
8FZF|1|a|A|321
8FZF|1|a|C|322
8FZF|1|a|U|323
8FZF|1|a|G|324
8FZF|1|a|A|325
8FZF|1|a|G|326
8FZF|1|a|A|327
8FZF|1|a|C|328
8FZF|1|a|A|329
8FZF|1|a|C|330
8FZF|1|a|G|331
8FZF|1|a|G|332
8FZF|1|a|U|333

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20