3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
8FZG|1|A|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZG_013 not in the Motif Atlas
Homologous match to HL_7A0S_014
Geometric discrepancy: 0.09
The information below is about HL_7A0S_014
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8FZG|1|A|G|410
8FZG|1|A|G|411
8FZG|1|A|A|412
8FZG|1|A|C|413
8FZG|1|A|C|414
8FZG|1|A|A|415
8FZG|1|A|U|416
8FZG|1|A|C|417

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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