3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGUAACACU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZG_021 not in the Motif Atlas
Geometric match to HL_6CF2_001
Geometric discrepancy: 0.3985
The information below is about HL_6CF2_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87553.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8FZG|1|A|G|711
8FZG|1|A|G|712
8FZG|1|A|G|713
8FZG|1|A|U|714
8FZG|1|A|A|715
8FZG|1|A|A|716
8FZG|1|A|C|717
8FZG|1|A|A|718
8FZG|1|A|C|719
8FZG|1|A|U|720

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain o
30S ribosomal protein S15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0995 s