HL_8FZG_105
3D structure
- PDB id
- 8FZG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 8FZG|1|y|U|33, 8FZG|1|y|A|38
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FZG_105 not in the Motif Atlas
- Homologous match to HL_4V7M_039
- Geometric discrepancy: 0.5888
- The information below is about HL_4V7M_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8FZG|1|y|G|30
8FZG|1|y|A|31
8FZG|1|y|PSU|32
8FZG|1|y|U|33
8FZG|1|y|G|34
8FZG|1|y|A|35
8FZG|1|y|A|36
8FZG|1|y|MIA|37
8FZG|1|y|A|38
8FZG|1|y|PSU|39
8FZG|1|y|C|40
Current chains
- Chain y
- P-site phenylalanyl-tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain x
- Transfer RNA; tRNA
- Chain z
- F-UAA mRNA
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