HL_8FZI_016

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8FZI|1|A|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_016 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.2218

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8FZI|1|A|C|544
8FZI|1|A|U|545
8FZI|1|A|U|546
8FZI|1|A|A|547
8FZI|1|A|G|548
8FZI|1|A|G|549

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain T

Ribosomal protein L21