HL_8FZI_053

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8FZI|1|A|A|2268, 8FZI|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0928

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8FZI|1|A|C|2264
8FZI|1|A|U|2265
8FZI|1|A|A|2266
8FZI|1|A|A|2267
8FZI|1|A|A|2268
8FZI|1|A|G|2269
8FZI|1|A|A|2270
8FZI|1|A|G|2271
8FZI|1|A|U|2272
8FZI|1|A|A|2273
8FZI|1|A|A|2274
8FZI|1|A|C|2275
8FZI|1|A|G|2276

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L16

Chain Y

50S ribosomal protein L27