3D structure

PDB id
8FZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
C(OMU)GUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZI_061 not in the Motif Atlas
Homologous match to HL_5J7L_195
Geometric discrepancy: 0.2031
The information below is about HL_5J7L_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8FZI|1|A|C|2551
8FZI|1|A|OMU|2552
8FZI|1|A|G|2553
8FZI|1|A|U|2554
8FZI|1|A|U|2555
8FZI|1|A|C|2556
8FZI|1|A|G|2557

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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