HL_8FZI_065

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FZI|1|A|G|2751, 8FZI|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1098

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8FZI|1|A|C|2745
8FZI|1|A|U|2746
8FZI|1|A|G|2747
8FZI|1|A|A|2748
8FZI|1|A|A|2749
8FZI|1|A|A|2750
8FZI|1|A|G|2751
8FZI|1|A|C|2752
8FZI|1|A|A|2753
8FZI|1|A|U|2754
8FZI|1|A|C|2755
8FZI|1|A|U|2756
8FZI|1|A|A|2757
8FZI|1|A|A|2758
8FZI|1|A|G|2759

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain L

50S ribosomal protein L13