HL_8FZJ_013

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8FZJ|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZJ_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.094

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FZJ|1|A|G|410
8FZJ|1|A|G|411
8FZJ|1|A|A|412
8FZJ|1|A|C|413
8FZJ|1|A|C|414
8FZJ|1|A|A|415
8FZJ|1|A|U|416
8FZJ|1|A|C|417

Current chains

Chain A

23S Ribosomal RNA

Nearby chains