HL_8FZJ_072

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGCUUGCUUC

Length

12 nucleotides

Bulged bases

8FZJ|1|a|U|84

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZJ_072 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1539

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FZJ|1|a|G|79
8FZJ|1|a|A|80
8FZJ|1|a|A|81
8FZJ|1|a|G|82
8FZJ|1|a|C|83
8FZJ|1|a|U|84
8FZJ|1|a|U|85
8FZJ|1|a|G|86
8FZJ|1|a|C|87
8FZJ|1|a|U|88
8FZJ|1|a|U|89
8FZJ|1|a|C|90

Current chains

Chain a

16S Ribosomal RNA

Nearby chains