HL_8G2A_227
3D structure
- PDB id
- 8G2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 8G2A|1|1y|U|33
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G2A_227 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.4535
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
8G2A|1|1y|A|31
8G2A|1|1y|PSU|32
8G2A|1|1y|U|33
8G2A|1|1y|G|34
8G2A|1|1y|A|35
8G2A|1|1y|A|36
8G2A|1|1y|MIA|37
8G2A|1|1y|A|38
8G2A|1|1y|PSU|39
Current chains
- Chain 1y
- E-site Deacylated tRNAphe
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
- Chain 1v
- MF-mRNA
- Chain 1x
- Transfer RNA; tRNA
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