HL_8G2B_006

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

8G2B|1|1A|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2B_006 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.112

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8G2B|1|1A|A|225
8G2B|1|1A|G|226
8G2B|1|1A|A|227
8G2B|1|1A|A|228
8G2B|1|1A|A|229
8G2B|1|1A|U|230

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15