HL_8G2B_027
3D structure
- PDB id
- 8G2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAUAACG
- Length
- 8 nucleotides
- Bulged bases
- 8G2B|1|1A|U|958, 8G2B|1|1A|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G2B_027 not in the Motif Atlas
- Homologous match to HL_7RQB_027
- Geometric discrepancy: 0.0508
- The information below is about HL_7RQB_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_35490.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 299
Unit IDs
8G2B|1|1A|C|955
8G2B|1|1A|G|956
8G2B|1|1A|A|957
8G2B|1|1A|U|958
8G2B|1|1A|A|959
8G2B|1|1A|A|960
8G2B|1|1A|C|961
8G2B|1|1A|G|962
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
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