HL_8G2B_054
3D structure
- PDB id
- 8G2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8G2B|1|1A|A|2268, 8G2B|1|1A|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G2B_054 not in the Motif Atlas
- Homologous match to HL_7RQB_054
- Geometric discrepancy: 0.0481
- The information below is about HL_7RQB_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.6
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8G2B|1|1A|C|2264
8G2B|1|1A|U|2265
8G2B|1|1A|A|2266
8G2B|1|1A|A|2267
8G2B|1|1A|A|2268
8G2B|1|1A|A|2269
8G2B|1|1A|G|2270
8G2B|1|1A|G|2271
8G2B|1|1A|U|2272
8G2B|1|1A|A|2273
8G2B|1|1A|A|2274
8G2B|1|1A|C|2275
8G2B|1|1A|G|2276
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
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