3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
8G2D|1|1a|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G2D_095 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.099
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8G2D|1|1a|G|1089
8G2D|1|1a|U|1090
8G2D|1|1a|U|1091
8G2D|1|1a|A|1092
8G2D|1|1a|A|1093
8G2D|1|1a|G|1094
8G2D|1|1a|U|1095
8G2D|1|1a|C|1096

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1b
30S ribosomal protein S2
Chain 1g
30S ribosomal protein S7

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5517 s
Application loaded.