HL_8G2U_053

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8G2U|1|B|A|2030, 8G2U|1|B|A|2031, 8G2U|1|B|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2U_053 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1017

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8G2U|1|B|G|2027
8G2U|1|B|U|2028
8G2U|1|B|G|2029
8G2U|1|B|A|2030
8G2U|1|B|A|2031
8G2U|1|B|G|2032
8G2U|1|B|A|2033
8G2U|1|B|U|2034
8G2U|1|B|G|2035
8G2U|1|B|C|2036

Current chains

Chain B

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

Ribosomal protein L21