8G2U Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8G2U_036 | 1/B/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8G2U_049 | 1/B/1868:1873 | GNRA | geometric HL_4C7O_001 HL_34789.2 | |
| HL_8G2U_050 | 1/B/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_82185.1 | |
| HL_8G2U_063 | 1/B/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_8G2U_064 | 1/B/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8G2U_069 | 1/B/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_8G2U_073 | 1/v/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_8G2U_080 | 1/v/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_8G2U_082 | 1/v/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_8G2U_084 | 1/v/462:470 | No text annotation | ||
| HL_8G2U_085 | 1/v/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_8G2U_087 | 1/v/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_8G2U_088 | 1/v/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8G2U_089 | 1/v/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_8G2U_091 | 1/v/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_8G2U_093 | 1/v/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_8G2U_094 | 1/v/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.2 | |
| HL_8G2U_095 | 1/v/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8G2U_096 | 1/v/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_8G2U_098 | 1/v/1165:1171 | GNRA | homologous HL_5J7L_026 NA | |
| HL_8G2U_101 | 1/v/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8G2U_001 | No text annotation | ||
| HL_8G2U_002 | Mini UNCG | ||
| HL_8G2U_003 | No text annotation | ||
| HL_8G2U_004 | No text annotation | ||
| HL_8G2U_005 | No text annotation | ||
| HL_8G2U_006 | UNCG | ||
| HL_8G2U_007 | No text annotation | ||
| HL_8G2U_008 | No text annotation | ||
| HL_8G2U_009 | No text annotation | ||
| HL_8G2U_010 | No text annotation | ||
| HL_8G2U_011 | T-loop with 2 stacked bulged bases | ||
| HL_8G2U_012 | No text annotation | ||
| HL_8G2U_013 | T-loop with unstacked turn | ||
| HL_8G2U_014 | No text annotation | ||
| HL_8G2U_015 | Pseudoknot geometry | ||
| HL_8G2U_016 | GNRA | ||
| HL_8G2U_017 | GNRA | ||
| HL_8G2U_018 | No text annotation | ||
| HL_8G2U_019 | T-loop with 2 stacked bulged bases | ||
| HL_8G2U_020 | No text annotation | ||
| HL_8G2U_021 | GNRA | ||
| HL_8G2U_022 | GNRA | ||
| HL_8G2U_023 | No text annotation | ||
| HL_8G2U_024 | No text annotation | ||
| HL_8G2U_025 | No text annotation | ||
| HL_8G2U_026 | No text annotation | ||
| HL_8G2U_027 | No text annotation | ||
| HL_8G2U_028 | GNRA | ||
| HL_8G2U_029 | No text annotation | ||
| HL_8G2U_030 | No text annotation | ||
| HL_8G2U_031 | No text annotation | ||
| HL_8G2U_032 | No text annotation | ||
| HL_8G2U_033 | GNRA | ||
| HL_8G2U_034 | T-loop with 2 stacked bulged bases | ||
| HL_8G2U_035 | Pseudoknot geometry with 3' bulge | ||
| HL_8G2U_037 | No text annotation | ||
| HL_8G2U_038 | No text annotation | ||
| HL_8G2U_039 | Pseudoknot geometry with 3' bulge | ||
| HL_8G2U_040 | UNCG | ||
| HL_8G2U_041 | No text annotation | ||
| HL_8G2U_042 | No text annotation | ||
| HL_8G2U_043 | GNRA | ||
| HL_8G2U_044 | No text annotation | ||
| HL_8G2U_045 | No text annotation | ||
| HL_8G2U_046 | No text annotation | ||
| HL_8G2U_047 | No text annotation | ||
| HL_8G2U_048 | GNRA related | ||
| HL_8G2U_051 | No text annotation | ||
| HL_8G2U_052 | No text annotation | ||
| HL_8G2U_053 | No text annotation | ||
| HL_8G2U_054 | No text annotation | ||
| HL_8G2U_055 | No text annotation | ||
| HL_8G2U_056 | No text annotation | ||
| HL_8G2U_057 | No text annotation | ||
| HL_8G2U_058 | No text annotation | ||
| HL_8G2U_104 | No text annotation | ||
| HL_8G2U_059 | Pseudoknot geometry | ||
| HL_8G2U_060 | GNRA | ||
| HL_8G2U_061 | GNRA | ||
| HL_8G2U_062 | No text annotation | ||
| HL_8G2U_065 | No text annotation | ||
| HL_8G2U_066 | GNRA | ||
| HL_8G2U_067 | GNRA | ||
| HL_8G2U_068 | Ribsomal LSU H95 | ||
| HL_8G2U_070 | No text annotation | ||
| HL_8G2U_105 | No text annotation | ||
| HL_8G2U_071 | No text annotation | ||
| HL_8G2U_072 | GNRA | ||
| HL_8G2U_074 | No text annotation | ||
| HL_8G2U_075 | GNRA | ||
| HL_8G2U_076 | GNRA | ||
| HL_8G2U_077 | Externally structured | ||
| HL_8G2U_078 | GNRA related | ||
| HL_8G2U_079 | GNRA | ||
| HL_8G2U_081 | UNCG | ||
| HL_8G2U_083 | UNCG | ||
| HL_8G2U_086 | GNRA-like with tWH | ||
| HL_8G2U_090 | Externally structured | ||
| HL_8G2U_092 | GNRA | ||
| HL_8G2U_097 | No text annotation | ||
| HL_8G2U_099 | No text annotation | ||
| HL_8G2U_100 | T-loop with 3 stacked bulged bases | ||
| HL_8G2U_102 | UNCG | ||
| HL_8G2U_103 | GNRA variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8G2U_043 | 1/B/1038:1041, 1/B/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_8G2U_055 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_8G2U_067 | 1/B/1720:1724, 1/B/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_8G2U_071 | 1/B/1837:1840, 1/B/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8G2U_072 | 1/B/1841:1842, 1/B/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8G2U_076 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_8G2U_105 | 1/B/2687:2691, 1/B/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_8G2U_112 | 1/v/30:32, 1/v/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_8G2U_117 | 1/v/67:69, 1/v/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_8G2U_123 | 1/v/132:136, 1/v/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_8G2U_127 | 1/v/242:247, 1/v/277:284 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_8G2U_133 | 1/v/409:416, 1/v/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_8G2U_137 | 1/v/504:511, 1/v/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_8G2U_138 | 1/v/515:521, 1/v/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8G2U_139 | 1/v/569:575, 1/v/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8G2U_140 | 1/v/580:584, 1/v/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_8G2U_142 | 1/v/597:599, 1/v/639:643 | 8-nt loop receptor | geometric IL_6CK5_002 IL_70784.1 | |
| IL_8G2U_143 | 1/v/605:612, 1/v/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_8G2U_144 | 1/v/654:655, 1/v/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_8G2U_145 | 1/v/659:660, 1/v/745:747 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_8G2U_146 | 1/v/662:666, 1/v/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8G2U_189 | 1/v/673:677, 1/v/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.2 | |
| IL_8G2U_148 | 1/v/684:688, 1/v/699:706 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_8G2U_149 | 1/v/774:778, 1/v/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8G2U_150 | 1/v/779:783, 1/v/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_8G2U_152 | 1/v/922:923, 1/v/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_8G2U_154 | 1/v/933:935, 1/v/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8G2U_155 | 1/v/953:954, 1/v/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8G2U_156 | 1/v/993:997, 1/v/1044:1045 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_8G2U_159 | 1/v/1048:1050, 1/v/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_8G2U_160 | 1/v/1052:1056, 1/v/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_8G2U_161 | 1/v/1057:1058, 1/v/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8G2U_162 | 1/v/1060:1061, 1/v/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_8G2U_163 | 1/v/1061:1063, 1/v/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_8G2U_165 | 1/v/1124:1129, 1/v/1143:1149 | No text annotation | ||
| IL_8G2U_190 | 1/v/1124:1132, 1/v/1142:1149 | No text annotation | ||
| IL_8G2U_167 | 1/v/1158:1161, 1/v/1175:1181 | No text annotation | homologous IL_4LFB_050 IL_32376.1 | |
| IL_8G2U_168 | 1/v/1247:1253, 1/v/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8G2U_169 | 1/v/1255:1258, 1/v/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_8G2U_192 | 1/v/1259:1264, 1/v/1271:1276 | No text annotation | ||
| IL_8G2U_171 | 1/v/1303:1308, 1/v/1329:1334 | No text annotation | geometric IL_5J7L_057 NA | |
| IL_8G2U_173 | 1/v/1399:1401, 1/v/1501:1504 | No text annotation | geometric IL_5J7L_058 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8G2U_001 | Major groove intercalation | ||
| IL_8G2U_002 | No text annotation | ||
| IL_8G2U_003 | Minor groove platform | ||
| IL_8G2U_004 | Symmetric double minor groove platform | ||
| IL_8G2U_005 | Bacterial 5S Loop E | ||
| IL_8G2U_006 | Triple sheared with non-canonical cWW | ||
| IL_8G2U_007 | Single bulged A | ||
| IL_8G2U_008 | Minor groove platform | ||
| IL_8G2U_009 | No text annotation | ||
| IL_8G2U_010 | Single stack bend | ||
| IL_8G2U_011 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8G2U_012 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8G2U_013 | No text annotation | ||
| IL_8G2U_014 | No text annotation | ||
| IL_8G2U_015 | No text annotation | ||
| IL_8G2U_016 | No text annotation | ||
| IL_8G2U_017 | No text annotation | ||
| IL_8G2U_018 | Double sheared | ||
| IL_8G2U_019 | Isolated non-canonical cWW pair | ||
| IL_8G2U_020 | AAA cross-strand stack | ||
| IL_8G2U_021 | No text annotation | ||
| IL_8G2U_022 | tHW-tHW cross-strand stack | ||
| IL_8G2U_023 | Single bulged A | ||
| IL_8G2U_024 | Single bulged G | ||
| IL_8G2U_025 | Triple sheared | ||
| IL_8G2U_026 | Major groove platform | ||
| IL_8G2U_027 | Multiple bulged bases | ||
| IL_8G2U_028 | No text annotation | ||
| IL_8G2U_029 | Single stack bend | ||
| IL_8G2U_030 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8G2U_031 | Single bulged G | ||
| IL_8G2U_032 | C-loop with bulged stacked A's | ||
| IL_8G2U_033 | Isolated non-canonical cWW pair | ||
| IL_8G2U_034 | Double sheared with non-canonical cWW | ||
| IL_8G2U_035 | No text annotation | ||
| IL_8G2U_036 | Single bulged C | ||
| IL_8G2U_037 | UAA/GAN | ||
| IL_8G2U_038 | SSU/LSU pseudoknot | ||
| IL_8G2U_039 | Single bulged U | ||
| IL_8G2U_040 | Kink-turn related | ||
| IL_8G2U_041 | No text annotation | ||
| IL_8G2U_042 | Isolated non-canonical cWW pair | ||
| IL_8G2U_044 | No text annotation | ||
| IL_8G2U_045 | No text annotation | ||
| IL_8G2U_046 | Major groove platform | ||
| IL_8G2U_047 | Isolated cWS basepair | ||
| IL_8G2U_048 | No text annotation | ||
| IL_8G2U_049 | Kink-turn | ||
| IL_8G2U_050 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8G2U_051 | Major groove platform; stack outside cWW | ||
| IL_8G2U_052 | C-loop | ||
| IL_8G2U_053 | UAA/GAN | ||
| IL_8G2U_054 | tSH-tHW-tHS | ||
| IL_8G2U_056 | UAA/GAN | ||
| IL_8G2U_057 | Tandem non-canonical cWW pairs | ||
| IL_8G2U_058 | tSH-tHW | ||
| IL_8G2U_059 | No text annotation | ||
| IL_8G2U_060 | tSH-tHW-tHS | ||
| IL_8G2U_061 | 180 degree turn | ||
| IL_8G2U_062 | Single bulged A | ||
| IL_8G2U_063 | UAA/GAN variation | ||
| IL_8G2U_064 | No text annotation | ||
| IL_8G2U_181 | Isolated tWW turn | ||
| IL_8G2U_182 | Major groove platform; stack outside cWW | ||
| IL_8G2U_183 | No text annotation | ||
| IL_8G2U_184 | Intercalated tWH | ||
| IL_8G2U_065 | tSH-tSH-tHH-tHS | ||
| IL_8G2U_066 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8G2U_068 | Single bulged C | ||
| IL_8G2U_069 | Single bulged A | ||
| IL_8G2U_070 | Kink-turn related | ||
| IL_8G2U_073 | Minor groove platform | ||
| IL_8G2U_185 | No text annotation | ||
| IL_8G2U_074 | UAA/GAN related | ||
| IL_8G2U_075 | Bulged stacked bases | ||
| IL_8G2U_077 | Major groove platform | ||
| IL_8G2U_078 | No text annotation | ||
| IL_8G2U_079 | Single bulged U | ||
| IL_8G2U_080 | Minor groove platform | ||
| IL_8G2U_081 | Isolated tHS basepair with bulges | ||
| IL_8G2U_082 | Isolated non-canonical cWW pair | ||
| IL_8G2U_083 | Isolated non-canonical cWW contact | ||
| IL_8G2U_084 | Isolated non-canonical cWW pair | ||
| IL_8G2U_085 | No text annotation | ||
| IL_8G2U_086 | No text annotation | ||
| IL_8G2U_186 | No text annotation | ||
| IL_8G2U_187 | No text annotation | ||
| IL_8G2U_087 | Single bulged U | ||
| IL_8G2U_088 | No text annotation | ||
| IL_8G2U_089 | Double sheared | ||
| IL_8G2U_090 | Single bulged U | ||
| IL_8G2U_091 | Single stack bend | ||
| IL_8G2U_092 | Major groove platform | ||
| IL_8G2U_093 | Major groove platform | ||
| IL_8G2U_094 | Major groove minor groove platform with extra cWW | ||
| IL_8G2U_095 | Double sheared with non-canonical cWW | ||
| IL_8G2U_096 | Major groove platform | ||
| IL_8G2U_097 | Isolated non-canonical cWW with bulges | ||
| IL_8G2U_098 | No text annotation | ||
| IL_8G2U_099 | Major groove platform with intercalation | ||
| IL_8G2U_100 | Isolated non-canonical cWW pair | ||
| IL_8G2U_101 | Single bulged A | ||
| IL_8G2U_102 | tSH-tHS-tHW | ||
| IL_8G2U_103 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8G2U_104 | C-loop | ||
| IL_8G2U_106 | Multiple bulged bases | ||
| IL_8G2U_107 | UAA/GAN with extra cWW | ||
| IL_8G2U_108 | No text annotation | ||
| IL_8G2U_109 | Major groove intercalation | ||
| IL_8G2U_110 | Multiple bulged bases with non-canonical cWW | ||
| IL_8G2U_111 | tHS double platform | ||
| IL_8G2U_113 | Single bulged A | ||
| IL_8G2U_114 | No text annotation | ||
| IL_8G2U_115 | Minor groove platform | ||
| IL_8G2U_116 | Multiple bulged bases | ||
| IL_8G2U_118 | Minor groove platform | ||
| IL_8G2U_188 | Single bulged G | ||
| IL_8G2U_119 | Single bulged G, near cWW | ||
| IL_8G2U_120 | No text annotation | ||
| IL_8G2U_121 | No text annotation | ||
| IL_8G2U_122 | Isolated non-canonical cWW pair | ||
| IL_8G2U_124 | Isolated cWH basepair | ||
| IL_8G2U_125 | tWH-tWH-tHW-tHW | ||
| IL_8G2U_126 | No text annotation | ||
| IL_8G2U_128 | No text annotation | ||
| IL_8G2U_129 | C-loop | ||
| IL_8G2U_130 | Single bulged U | ||
| IL_8G2U_131 | C-loop | ||
| IL_8G2U_132 | Single bulged G | ||
| IL_8G2U_134 | No text annotation | ||
| IL_8G2U_135 | tSH-tHW-tWW | ||
| IL_8G2U_136 | No text annotation | ||
| IL_8G2U_141 | No text annotation | ||
| IL_8G2U_147 | No text annotation | ||
| IL_8G2U_151 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8G2U_153 | Single bulged G | ||
| IL_8G2U_157 | No text annotation | ||
| IL_8G2U_191 | No text annotation | ||
| IL_8G2U_158 | No text annotation | ||
| IL_8G2U_164 | Isolated non-canonical cWW pair | ||
| IL_8G2U_166 | Minor groove platform | ||
| IL_8G2U_170 | No text annotation | ||
| IL_8G2U_172 | Isolated cWH basepair | ||
| IL_8G2U_174 | No text annotation | ||
| IL_8G2U_175 | No text annotation | ||
| IL_8G2U_176 | Isolated non-canonical cWW pair | ||
| IL_8G2U_177 | Double sheared | ||
| IL_8G2U_178 | Triple sheared related | ||
| IL_8G2U_179 | Single bulged A | ||
| IL_8G2U_180 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8G2U_008 | 1/B/2295:2297, 1/B/2321:2323, 1/B/2332:2337 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_8G2U_027 | 1/B/2295:2299, 1/B/2317:2323, 1/B/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_8G2U_009 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_8G2U_031 | 1/v/586:588, 1/v/651:654, 1/v/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_8G2U_032 | 1/v/586:588, 1/v/651:655, 1/v/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8G2U_033 | 1/v/672:673, 1/v/717:725, 1/v/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_8G2U_011 | 1/v/826:829, 1/v/857:861, 1/v/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8G2U_012 | 1/v/936:939, 1/v/1344:1350, 1/v/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8G2U_013 | 1/v/943:946, 1/v/1235:1237, 1/v/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_8G2U_014 | 1/v/955:962, 1/v/973:984, 1/v/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_8G2U_015 | 1/v/990:993, 1/v/1045:1047, 1/v/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_8G2U_034 | 1/v/990:997, 1/v/1044:1047, 1/v/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8G2U_016 | 1/v/1063:1068, 1/v/1107:1113, 1/v/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8G2U_037 | 1/v/1073:1074, 1/v/1083:1086, 1/v/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8G2U_017 | 1/v/1116:1118, 1/v/1155:1158, 1/v/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8G2U_036 | 1/v/1116:1118, 1/v/1155:1161, 1/v/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8G2U_018 | 1/v/1237:1241, 1/v/1296:1303, 1/v/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_8G2U_009 | 1/B/1833:1835, 1/B/1905:1906, 1/B/1924:1933, 1/B/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_8G2U_011 | 1/B/2643:2646, 1/B/2674:2676, 1/B/2731:2735, 1/B/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_8G2U_012 | 1/v/115:122, 1/v/239:240, 1/v/286:289, 1/v/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_8G2U_014 | 1/v/575:577, 1/v/764:769, 1/v/810:821, 1/v/879:880 | No text annotation | homologous J4_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8G2U_001 | No text annotation | ||
| J3_8G2U_019 | No text annotation | ||
| J3_8G2U_020 | No text annotation | ||
| J3_8G2U_021 | No text annotation | ||
| J3_8G2U_022 | No text annotation | ||
| J3_8G2U_023 | No text annotation | ||
| J3_8G2U_002 | No text annotation | ||
| J3_8G2U_003 | No text annotation | ||
| J3_8G2U_004 | No text annotation | ||
| J3_8G2U_005 | No text annotation | ||
| J3_8G2U_006 | No text annotation | ||
| J3_8G2U_024 | No text annotation | ||
| J3_8G2U_025 | No text annotation | ||
| J3_8G2U_007 | Kink-turn 3-way junction | ||
| J3_8G2U_026 | No text annotation | ||
| J3_8G2U_028 | No text annotation | ||
| J3_8G2U_010 | No text annotation | ||
| J3_8G2U_029 | No text annotation | ||
| J3_8G2U_030 | No text annotation | ||
| J3_8G2U_035 | No text annotation | ||
| J4_8G2U_001 | No text annotation | ||
| J4_8G2U_002 | No text annotation | ||
| J4_8G2U_003 | No text annotation | ||
| J4_8G2U_004 | No text annotation | ||
| J4_8G2U_005 | No text annotation | ||
| J4_8G2U_006 | No text annotation | ||
| J4_8G2U_007 | No text annotation | ||
| J4_8G2U_008 | No text annotation | ||
| J4_8G2U_010 | No text annotation | ||
| J4_8G2U_013 | No text annotation | ||
| J5_8G2U_001 | No text annotation | ||
| J5_8G2U_002 | No text annotation | ||
| J5_8G2U_003 | No text annotation | ||
| J5_8G2U_004 | No text annotation | ||
| J5_8G2U_010 | No text annotation | ||
| J5_8G2U_005 | No text annotation | ||
| J5_8G2U_006 | No text annotation | ||
| J5_8G2U_007 | No text annotation | ||
| J5_8G2U_008 | No text annotation | ||
| J5_8G2U_009 | No text annotation | ||
| J6_8G2U_001 | No text annotation | ||
| J6_8G2U_002 | No text annotation | ||
| J7_8G2U_001 | No text annotation | ||
| J7_8G2U_002 | No text annotation |
Coloring options: