HL_8G2U_080

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2U_080 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1519

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8G2U|1|v|A|320
8G2U|1|v|A|321
8G2U|1|v|C|322
8G2U|1|v|U|323
8G2U|1|v|G|324
8G2U|1|v|A|325
8G2U|1|v|G|326
8G2U|1|v|A|327
8G2U|1|v|C|328
8G2U|1|v|A|329
8G2U|1|v|C|330
8G2U|1|v|G|331
8G2U|1|v|G|332
8G2U|1|v|U|333

Current chains

Chain v

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S16

Chain s

30S ribosomal protein S20