HL_8G31_046

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_046 not in the Motif Atlas

Homologous match to HL_5J7L_177

Geometric discrepancy: 0.1066

The information below is about HL_5J7L_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8G31|1|B|C|1752
8G31|1|B|G|1753
8G31|1|B|A|1754
8G31|1|B|A|1755
8G31|1|B|G|1756

Current chains

Chain B

23S

Nearby chains

Chain P

50S ribosomal protein L19

Chain v

Small subunit ribosomal RNA; SSU rRNA