8G31 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8G31_095 | 1/v/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8G31_001 | No text annotation | ||
| HL_8G31_002 | Mini UNCG | ||
| HL_8G31_003 | No text annotation | ||
| HL_8G31_004 | No text annotation | ||
| HL_8G31_005 | No text annotation | ||
| HL_8G31_006 | UNCG | ||
| HL_8G31_007 | No text annotation | ||
| HL_8G31_008 | No text annotation | ||
| HL_8G31_009 | No text annotation | ||
| HL_8G31_010 | No text annotation | ||
| HL_8G31_011 | T-loop with 2 stacked bulged bases | ||
| HL_8G31_012 | No text annotation | ||
| HL_8G31_013 | T-loop with unstacked turn | ||
| HL_8G31_014 | No text annotation | ||
| HL_8G31_015 | Pseudoknot geometry | ||
| HL_8G31_016 | GNRA | ||
| HL_8G31_017 | GNRA | ||
| HL_8G31_018 | Externally structured | ||
| HL_8G31_019 | T-loop with 2 stacked bulged bases | ||
| HL_8G31_020 | No text annotation | ||
| HL_8G31_021 | GNRA | ||
| HL_8G31_022 | GNRA | ||
| HL_8G31_023 | GNRA wlth tandem sheared | ||
| HL_8G31_024 | No text annotation | ||
| HL_8G31_025 | UNCG variation | ||
| HL_8G31_026 | No text annotation | ||
| HL_8G31_027 | No text annotation | ||
| HL_8G31_028 | GNRA | ||
| HL_8G31_029 | No text annotation | ||
| HL_8G31_030 | No text annotation | ||
| HL_8G31_031 | No text annotation | ||
| HL_8G31_032 | No text annotation | ||
| HL_8G31_033 | GNRA | ||
| HL_8G31_034 | T-loop with 2 stacked bulged bases | ||
| HL_8G31_035 | Pseudoknot geometry with 3' bulge | ||
| HL_8G31_036 | GNRA | ||
| HL_8G31_037 | No text annotation | ||
| HL_8G31_038 | No text annotation | ||
| HL_8G31_039 | Pseudoknot geometry with 3' bulge | ||
| HL_8G31_040 | No text annotation | ||
| HL_8G31_041 | No text annotation | ||
| HL_8G31_042 | No text annotation | ||
| HL_8G31_043 | GNRA | ||
| HL_8G31_044 | UNCG | ||
| HL_8G31_045 | No text annotation | ||
| HL_8G31_046 | No text annotation | ||
| HL_8G31_047 | No text annotation | ||
| HL_8G31_048 | GNRA related | ||
| HL_8G31_049 | No text annotation | ||
| HL_8G31_050 | No text annotation | ||
| HL_8G31_051 | No text annotation | ||
| HL_8G31_052 | No text annotation | ||
| HL_8G31_053 | No text annotation | ||
| HL_8G31_054 | No text annotation | ||
| HL_8G31_055 | No text annotation | ||
| HL_8G31_056 | No text annotation | ||
| HL_8G31_057 | No text annotation | ||
| HL_8G31_102 | No text annotation | ||
| HL_8G31_058 | No text annotation | ||
| HL_8G31_103 | Pseudoknot geometry | ||
| HL_8G31_059 | GNRA | ||
| HL_8G31_060 | GNRA | ||
| HL_8G31_061 | No text annotation | ||
| HL_8G31_062 | No text annotation | ||
| HL_8G31_063 | GNRA variation | ||
| HL_8G31_064 | No text annotation | ||
| HL_8G31_065 | GNRA | ||
| HL_8G31_066 | GNRA | ||
| HL_8G31_067 | Ribsomal LSU H95 | ||
| HL_8G31_068 | No text annotation | ||
| HL_8G31_069 | No text annotation | ||
| HL_8G31_070 | No text annotation | ||
| HL_8G31_071 | GNRA | ||
| HL_8G31_072 | No text annotation | ||
| HL_8G31_073 | Externally structured | ||
| HL_8G31_074 | No text annotation | ||
| HL_8G31_075 | GNRA | ||
| HL_8G31_076 | No text annotation | ||
| HL_8G31_077 | GNRA related | ||
| HL_8G31_078 | GNRA | ||
| HL_8G31_079 | No text annotation | ||
| HL_8G31_080 | No text annotation | ||
| HL_8G31_081 | GNRA | ||
| HL_8G31_082 | UNCG | ||
| HL_8G31_083 | GNRA wlth extra near cWW | ||
| HL_8G31_084 | No text annotation | ||
| HL_8G31_085 | GNRA-like with tWH | ||
| HL_8G31_086 | No text annotation | ||
| HL_8G31_087 | GNRA | ||
| HL_8G31_088 | No text annotation | ||
| HL_8G31_089 | No text annotation | ||
| HL_8G31_090 | GNRA | ||
| HL_8G31_091 | GNRA | ||
| HL_8G31_092 | No text annotation | ||
| HL_8G31_093 | No text annotation | ||
| HL_8G31_094 | GNRA | ||
| HL_8G31_096 | No text annotation | ||
| HL_8G31_097 | GNRA | ||
| HL_8G31_098 | GNRA | ||
| HL_8G31_099 | No text annotation | ||
| HL_8G31_100 | UNCG | ||
| HL_8G31_101 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8G31_001 | Major groove intercalation | ||
| IL_8G31_002 | No text annotation | ||
| IL_8G31_003 | No text annotation | ||
| IL_8G31_004 | Symmetric double minor groove platform | ||
| IL_8G31_005 | Bacterial 5S Loop E | ||
| IL_8G31_006 | No text annotation | ||
| IL_8G31_007 | Triple sheared with non-canonical cWW | ||
| IL_8G31_008 | Single bulged A | ||
| IL_8G31_009 | Minor groove platform | ||
| IL_8G31_010 | No text annotation | ||
| IL_8G31_011 | Single stack bend | ||
| IL_8G31_012 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8G31_013 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8G31_014 | No text annotation | ||
| IL_8G31_182 | No text annotation | ||
| IL_8G31_015 | No text annotation | ||
| IL_8G31_016 | No text annotation | ||
| IL_8G31_017 | No text annotation | ||
| IL_8G31_018 | No text annotation | ||
| IL_8G31_019 | Double sheared | ||
| IL_8G31_020 | Isolated non-canonical cWW pair | ||
| IL_8G31_021 | AAA cross-strand stack | ||
| IL_8G31_022 | No text annotation | ||
| IL_8G31_023 | tHW-tHW cross-strand stack | ||
| IL_8G31_024 | Single bulged A | ||
| IL_8G31_025 | Single bulged G | ||
| IL_8G31_026 | Triple sheared | ||
| IL_8G31_027 | No text annotation | ||
| IL_8G31_028 | Major groove platform | ||
| IL_8G31_029 | Multiple bulged bases | ||
| IL_8G31_030 | No text annotation | ||
| IL_8G31_183 | No text annotation | ||
| IL_8G31_031 | Single stack bend | ||
| IL_8G31_032 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8G31_033 | Single bulged G | ||
| IL_8G31_034 | C-loop with bulged stacked A's | ||
| IL_8G31_035 | Isolated cWS basepair | ||
| IL_8G31_036 | No text annotation | ||
| IL_8G31_037 | Single bulged C | ||
| IL_8G31_038 | UAA/GAN | ||
| IL_8G31_039 | SSU/LSU pseudoknot | ||
| IL_8G31_040 | Single bulged U | ||
| IL_8G31_041 | Kink-turn related | ||
| IL_8G31_042 | No text annotation | ||
| IL_8G31_043 | Isolated non-canonical cWW pair | ||
| IL_8G31_044 | Tandem non-canonical cWW pairs | ||
| IL_8G31_045 | No text annotation | ||
| IL_8G31_046 | No text annotation | ||
| IL_8G31_047 | Isolated cWS basepair | ||
| IL_8G31_048 | No text annotation | ||
| IL_8G31_049 | Kink-turn | ||
| IL_8G31_050 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8G31_051 | Major groove platform; stack outside cWW | ||
| IL_8G31_052 | C-loop | ||
| IL_8G31_053 | UAA/GAN | ||
| IL_8G31_054 | tSH-tHW-tHS | ||
| IL_8G31_055 | No text annotation | ||
| IL_8G31_056 | UAA/GAN | ||
| IL_8G31_057 | Tandem non-canonical cWW pairs | ||
| IL_8G31_058 | tSH-tHW | ||
| IL_8G31_059 | No text annotation | ||
| IL_8G31_184 | No text annotation | ||
| IL_8G31_060 | tSH-tHW-tHS | ||
| IL_8G31_061 | 180 degree turn | ||
| IL_8G31_062 | Isolated non-canonical cWW pair | ||
| IL_8G31_063 | Single bulged A | ||
| IL_8G31_064 | UAA/GAN variation | ||
| IL_8G31_065 | No text annotation | ||
| IL_8G31_066 | Isolated tWW turn | ||
| IL_8G31_067 | Major groove platform; stack outside cWW | ||
| IL_8G31_185 | No text annotation | ||
| IL_8G31_068 | Intercalated tWH | ||
| IL_8G31_069 | tSH-tSH-tHH-tHS | ||
| IL_8G31_070 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8G31_071 | No text annotation | ||
| IL_8G31_072 | Single bulged C | ||
| IL_8G31_073 | Single bulged A | ||
| IL_8G31_074 | Kink-turn related | ||
| IL_8G31_075 | Minor groove platform, major groove intercalation | ||
| IL_8G31_076 | Major groove intercalation | ||
| IL_8G31_077 | Minor groove platform | ||
| IL_8G31_186 | No text annotation | ||
| IL_8G31_187 | No text annotation | ||
| IL_8G31_078 | UAA/GAN related | ||
| IL_8G31_079 | No text annotation | ||
| IL_8G31_080 | Major groove platform | ||
| IL_8G31_081 | No text annotation | ||
| IL_8G31_082 | Single bulged U | ||
| IL_8G31_083 | Minor groove platform | ||
| IL_8G31_084 | Isolated tHS basepair with bulges | ||
| IL_8G31_085 | Isolated non-canonical cWW pair | ||
| IL_8G31_086 | No text annotation | ||
| IL_8G31_188 | No text annotation | ||
| IL_8G31_087 | No text annotation | ||
| IL_8G31_088 | Single bulged U | ||
| IL_8G31_089 | No text annotation | ||
| IL_8G31_090 | Isolated non-canonical cWW pair | ||
| IL_8G31_091 | Double sheared | ||
| IL_8G31_092 | Single bulged U | ||
| IL_8G31_093 | Major groove platform | ||
| IL_8G31_094 | Major groove platform with extra pair | ||
| IL_8G31_189 | Major groove platform | ||
| IL_8G31_095 | Major groove minor groove platform with extra cWW | ||
| IL_8G31_096 | Double sheared with non-canonical cWW | ||
| IL_8G31_097 | Major groove platform | ||
| IL_8G31_098 | Isolated non-canonical cWW with bulges | ||
| IL_8G31_099 | No text annotation | ||
| IL_8G31_100 | Major groove platform with intercalation | ||
| IL_8G31_101 | Single bulged A | ||
| IL_8G31_102 | tSH-tHS-tHW | ||
| IL_8G31_103 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8G31_104 | C-loop | ||
| IL_8G31_105 | UAA/GAN related, with intercalation | ||
| IL_8G31_106 | Multiple bulged bases | ||
| IL_8G31_107 | UAA/GAN with extra cWW | ||
| IL_8G31_108 | Isolated cWH basepair | ||
| IL_8G31_109 | No text annotation | ||
| IL_8G31_110 | Major groove intercalation | ||
| IL_8G31_111 | Multiple bulged bases with non-canonical cWW | ||
| IL_8G31_112 | tHS double platform | ||
| IL_8G31_113 | Single bulged G | ||
| IL_8G31_114 | Single bulged A | ||
| IL_8G31_115 | No text annotation | ||
| IL_8G31_116 | Minor groove platform | ||
| IL_8G31_117 | Multiple bulged bases | ||
| IL_8G31_118 | Minor groove platform with extra cWW | ||
| IL_8G31_119 | Minor groove platform | ||
| IL_8G31_120 | No text annotation | ||
| IL_8G31_121 | No text annotation | ||
| IL_8G31_190 | No text annotation | ||
| IL_8G31_122 | No text annotation | ||
| IL_8G31_123 | Isolated non-canonical cWW pair | ||
| IL_8G31_124 | Minor groove platform related | ||
| IL_8G31_125 | Isolated cWH basepair | ||
| IL_8G31_126 | tWH-tWH-tHW-tHW | ||
| IL_8G31_127 | No text annotation | ||
| IL_8G31_128 | Kink-turn with non-sequential stacking | ||
| IL_8G31_129 | No text annotation | ||
| IL_8G31_130 | C-loop | ||
| IL_8G31_131 | Single bulged U | ||
| IL_8G31_132 | C-loop | ||
| IL_8G31_133 | Single bulged G | ||
| IL_8G31_134 | No text annotation | ||
| IL_8G31_135 | No text annotation | ||
| IL_8G31_136 | tSH-tHW-tWW | ||
| IL_8G31_137 | No text annotation | ||
| IL_8G31_138 | SSU/LSU pseudoknot | ||
| IL_8G31_139 | Kink-turn related | ||
| IL_8G31_140 | No text annotation | ||
| IL_8G31_141 | tSH-tHW-tHS | ||
| IL_8G31_142 | Major groove platform | ||
| IL_8G31_143 | Major groove minor groove platform; mini C-loop | ||
| IL_8G31_144 | No text annotation | ||
| IL_8G31_145 | Major groove platform; stack outside cWW | ||
| IL_8G31_146 | Single stack bend | ||
| IL_8G31_147 | Tandem non-canonical cWW pairs | ||
| IL_8G31_191 | Triple non-canonical cWW pairs | ||
| IL_8G31_148 | No text annotation | ||
| IL_8G31_149 | Kink-turn | ||
| IL_8G31_150 | Left turn | ||
| IL_8G31_151 | tSH-tHW-tHS | ||
| IL_8G31_152 | Isolated non-canonical cWW pair | ||
| IL_8G31_153 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8G31_154 | Single bulged A | ||
| IL_8G31_155 | Single bulged G | ||
| IL_8G31_156 | Minor groove platform | ||
| IL_8G31_157 | No text annotation | ||
| IL_8G31_158 | Isolated near basepair | ||
| IL_8G31_159 | Minor groove platform | ||
| IL_8G31_160 | Single stack bend | ||
| IL_8G31_161 | No text annotation | ||
| IL_8G31_162 | Single bulged U | ||
| IL_8G31_163 | Isolated cWS basepair | ||
| IL_8G31_164 | Minor groove platform | ||
| IL_8G31_165 | Single bulged A | ||
| IL_8G31_166 | Isolated non-canonical cWW pair | ||
| IL_8G31_167 | No text annotation | ||
| IL_8G31_168 | Minor groove platform | ||
| IL_8G31_192 | No text annotation | ||
| IL_8G31_169 | No text annotation | ||
| IL_8G31_170 | No text annotation | ||
| IL_8G31_171 | No text annotation | ||
| IL_8G31_172 | 180 degree turn | ||
| IL_8G31_173 | Double sheared with non-canonical cWW | ||
| IL_8G31_174 | No text annotation | ||
| IL_8G31_175 | No text annotation | ||
| IL_8G31_176 | No text annotation | ||
| IL_8G31_177 | Double sheared | ||
| IL_8G31_178 | Isolated non-canonical cWW pair | ||
| IL_8G31_179 | Triple sheared related | ||
| IL_8G31_180 | Single bulged A | ||
| IL_8G31_181 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8G31_001 | No text annotation | ||
| J3_8G31_016 | No text annotation | ||
| J3_8G31_017 | No text annotation | ||
| J3_8G31_018 | No text annotation | ||
| J3_8G31_019 | No text annotation | ||
| J3_8G31_020 | No text annotation | ||
| J3_8G31_002 | No text annotation | ||
| J3_8G31_003 | No text annotation | ||
| J3_8G31_021 | No text annotation | ||
| J3_8G31_004 | No text annotation | ||
| J3_8G31_005 | No text annotation | ||
| J3_8G31_022 | No text annotation | ||
| J3_8G31_023 | No text annotation | ||
| J3_8G31_006 | Kink-turn 3-way junction | ||
| J3_8G31_024 | No text annotation | ||
| J3_8G31_007 | No text annotation | ||
| J3_8G31_025 | No text annotation | ||
| J3_8G31_008 | No text annotation | ||
| J3_8G31_026 | No text annotation | ||
| J3_8G31_009 | No text annotation | ||
| J3_8G31_027 | No text annotation | ||
| J3_8G31_028 | No text annotation | ||
| J3_8G31_029 | No text annotation | ||
| J3_8G31_030 | No text annotation | ||
| J3_8G31_031 | No text annotation | ||
| J3_8G31_010 | No text annotation | ||
| J3_8G31_011 | No text annotation | ||
| J3_8G31_012 | No text annotation | ||
| J3_8G31_032 | No text annotation | ||
| J3_8G31_013 | No text annotation | ||
| J3_8G31_033 | No text annotation | ||
| J3_8G31_014 | No text annotation | ||
| J3_8G31_036 | No text annotation | ||
| J3_8G31_034 | No text annotation | ||
| J3_8G31_015 | No text annotation | ||
| J3_8G31_035 | No text annotation | ||
| J4_8G31_001 | No text annotation | ||
| J4_8G31_002 | No text annotation | ||
| J4_8G31_003 | No text annotation | ||
| J4_8G31_004 | No text annotation | ||
| J4_8G31_005 | No text annotation | ||
| J4_8G31_006 | No text annotation | ||
| J4_8G31_007 | No text annotation | ||
| J4_8G31_008 | No text annotation | ||
| J4_8G31_009 | No text annotation | ||
| J4_8G31_010 | No text annotation | ||
| J4_8G31_011 | No text annotation | ||
| J4_8G31_012 | No text annotation | ||
| J4_8G31_013 | No text annotation | ||
| J4_8G31_014 | No text annotation | ||
| J5_8G31_001 | No text annotation | ||
| J5_8G31_002 | No text annotation | ||
| J5_8G31_003 | No text annotation | ||
| J5_8G31_004 | No text annotation | ||
| J5_8G31_005 | No text annotation | ||
| J5_8G31_006 | No text annotation | ||
| J5_8G31_007 | No text annotation | ||
| J5_8G31_008 | No text annotation | ||
| J5_8G31_010 | No text annotation | ||
| J5_8G31_009 | No text annotation | ||
| J6_8G31_001 | No text annotation | ||
| J6_8G31_002 | No text annotation | ||
| J7_8G31_001 | No text annotation | ||
| J7_8G31_002 | No text annotation |
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