HL_8G38_056

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8G38|1|B|A|2268, 8G38|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_056 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1362

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8G38|1|B|C|2264
8G38|1|B|U|2265
8G38|1|B|A|2266
8G38|1|B|A|2267
8G38|1|B|A|2268
8G38|1|B|G|2269
8G38|1|B|A|2270
8G38|1|B|G|2271
8G38|1|B|U|2272
8G38|1|B|A|2273
8G38|1|B|A|2274
8G38|1|B|C|2275
8G38|1|B|G|2276

Current chains

Chain B

23S

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27