HL_8G4S_006

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_006 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1664

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8G4S|1|2|U|280
8G4S|1|2|C|281
8G4S|1|2|A|282
8G4S|1|2|G|283
8G4S|1|2|G|284
8G4S|1|2|G|285

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Ribosomal protein S2

Chain J

Ribosomal protein S9

Chain L

SSU ribosomal protein S17P

Chain W

SSU ribosomal protein S8P (Fragment)